HL_1FFK_023

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

1FFK|1|0|A|874, 1FFK|1|0|G|877

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_023 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.1682

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|U|872
1FFK|1|0|G|873
1FFK|1|0|A|874
1FFK|1|0|A|875
1FFK|1|0|A|876
1FFK|1|0|G|877
1FFK|1|0|G|878

Current chains

Chain 0

23S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN L2