HL_1FFK_056

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_056 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0379

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1FFK|1|0|U|2389
1FFK|1|0|U|2390
1FFK|1|0|C|2391
1FFK|1|0|C|2392
1FFK|1|0|C|2393
1FFK|1|0|A|2394
1FFK|1|0|A|2395
1FFK|1|0|C|2396
1FFK|1|0|G|2397
1FFK|1|0|A|2398
1FFK|1|0|G|2399

Current chains

Chain 0

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L21E