HL_1FFK_061

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_061 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3846

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1FFK|1|0|G|2585
1FFK|1|0|U|2586
1FFK|1|0|U|2587
1FFK|1|0|G|2588
1FFK|1|0|U|2589
1FFK|1|0|U|2590
1FFK|1|0|C|2591
1FFK|1|0|G|2592
1FFK|1|0|C|2593

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3