HL_1FFK_065

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1FFK|1|0|G|2786, 1FFK|1|0|C|2790

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFK_065 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0365

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1FFK|1|0|C|2780
1FFK|1|0|U|2781
1FFK|1|0|G|2782
1FFK|1|0|A|2783
1FFK|1|0|A|2784
1FFK|1|0|C|2785
1FFK|1|0|G|2786
1FFK|1|0|C|2787
1FFK|1|0|A|2788
1FFK|1|0|U|2789
1FFK|1|0|C|2790
1FFK|1|0|U|2791
1FFK|1|0|A|2792
1FFK|1|0|A|2793
1FFK|1|0|G|2794

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L6

Chain G

RIBOSOMAL PROTEIN L13