HL_1FFZ_008

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_008 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0643

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1FFZ|1|A|U|2389
1FFZ|1|A|U|2390
1FFZ|1|A|C|2391
1FFZ|1|A|C|2392
1FFZ|1|A|C|2393
1FFZ|1|A|A|2394
1FFZ|1|A|A|2395
1FFZ|1|A|C|2396
1FFZ|1|A|G|2397
1FFZ|1|A|A|2398
1FFZ|1|A|G|2399

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains