HL_1FFZ_013

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_013 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3902

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1FFZ|1|A|G|2585
1FFZ|1|A|U|2586
1FFZ|1|A|U|2587
1FFZ|1|A|G|2588
1FFZ|1|A|U|2589
1FFZ|1|A|U|2590
1FFZ|1|A|C|2591
1FFZ|1|A|G|2592
1FFZ|1|A|C|2593

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain B

R(P*CP*C*)-D(P*A)-R(P*(PU))