HL_1FFZ_015

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGGGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FFZ_015 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2585

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

1FFZ|1|A|C|2247
1FFZ|1|A|C|2248
1FFZ|1|A|G|2249
1FFZ|1|A|G|2250
1FFZ|1|A|G|2251
1FFZ|1|A|A|2252
1FFZ|1|A|G|2253
1FFZ|1|A|G|2254

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains