Motif HL_82182.1 Version HL_82182.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | 3-6 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZZN_005 | 2ZZN | 0.7078 | 1 | D | RNA (71-MER) | A | 31 | C | 32 | U | 33 | G | 34 | C | 35 | A | 36 | A | 38 | U | 39 | cWW | cWW | ncSH | |||
| 2 | HL_6CZR_077 | 6CZR | 0.1669 | 1 | GNRA related | 1a | SSU rRNA | G | 255 | G | 256 | U | 257 | A | 258 | A | 259 | U | 260 | G | 261 | C | 263 | cWW | ||||
| 3 | HL_4V88_193 | 4V88 | 0.1573 | 1 | GNRA related | A6 | SSU rRNA | G | 330 | A | 331 | U | 332 | A | 333 | G | 334 | U | 335 | G | 336 | C | 338 | cWW | ||||
| 4 | HL_8C3A_199 | 8C3A | 0.1612 | 1 | GNRA related | CM | SSU rRNA | G | 328 | A | 329 | U | 330 | A | 331 | G | 332 | U | 333 | G | 334 | C | 336 | cWW | ||||
| 5 | HL_5J7L_006 | 5J7L | 0.1432 | 1 | GNRA related | AA | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | C | 264 | G | 265 | C | 267 | cWW | ||||
| 6 | HL_4LFB_006 | 4LFB | 0.0000 | 1 | GNRA related | A | SSU rRNA | G | 259 | G | 260 | U | 261 | A | 262 | A | 263 | U | 264 | G | 265 | C | 267 | cWW | ||||
| 7 | HL_4R4V_003 | 4R4V | 0.3403 | 1 | T-loop related | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | ||||
| 8 | HL_5L4O_002 | 5L4O | 0.3616 | 1 | tRNA anticodon loop | A | tRNA | G | 31 | OMC | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW | |||
| 9 | HL_1U9S_003 | 1U9S | 0.4256 | 1 | A | RIBONUCLEASE P | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | |||||
| 10 | HL_3CUL_003 | 3CUL | 0.5421 | 1 | T-loop related | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | |||
| 11 | HL_4WF9_039 | 4WF9 | 0.5942 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH | ||
| 12 | HL_4V87_253 | 4V87 | 0.6764 | 0 | GNRA with near cWW | BB | TRNA-LEU | C | 48 | C | 49 | A | 50 | A | 51 | U | 52 | A | 53 | G | 54 | G | 55 | ncWW | ||||
| 13 | HL_6CZR_215 | 6CZR | 0.6658 | 0 | GNRA with near cWW | 1a | SSU rRNA | G | 152 | G | 153 | G | 154 | A | 155 | A | 156 | A | 157 | C | 158 | U | 159 | ncWW | ncWW | ntSH | ||
| 14 | HL_2IL9_007 | 2IL9 | 0.5074 | 0 | GNRA with near cWW | A | Ribosomal Binding Domain of the IRES RNA | G | 6118 | C | 6119 | G | 6119|||A | A | 6119|||B | A | 6119|||C | A | 6119|||D | G | 6119|||E | C | 6124 | cWW | ncWW | tSH | ||
| 15 | HL_7QR8_003 | 7QR8 | 0.5365 | 0 | GNRA with extra tWH | A | PTPRC sgRNA | U | 71 | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | A | 78 | cWW | ntSH | |||
| 16 | HL_3RG5_006 | 3RG5 | 0.4808 | 1 | tRNA anticodon loop | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW | |||
| 17 | HL_7A0S_056 | 7A0S | 0.5097 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2334 | U | 2335 | G | 2336 | A | 2337 | C | 2338 | A | 2339 | C | 2340 | G | 2341 | cWW | ntSH | |||
| 18 | HL_8VTW_056 | 8VTW | 0.5438 | 0 | GNRA with extra cWW | 1A | LSU rRNA | C | 2355 | C | 2356 | U | 2357 | G | 2358 | C | 2359 | A | 2360 | A | 2361 | G | 2362 | cWW | ncWW | |||
| 19 | HL_4WF9_053 | 4WF9 | 0.5478 | 0 | GNRA with extra cWW | X | LSU rRNA | C | 2382 | C | 2383 | U | 2384 | A | 2385 | C | 2386 | A | 2387 | A | 2388 | G | 2389 | cWW | ncWW | |||
| 20 | HL_8KAL_001 | 8KAL | 0.5063 | 0 | GNRA with extra cWW | A | RNA (98-MER) | U | 31 | A | 32 | G | 33 | A | 34 | A | 35 | A | 36 | U | 37 | A | 38 | ncWW | ||||
| 21 | HL_3R9X_002 | 3R9X | 0.6508 | 0 | GNRA related | C | RNA301 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAUGGC | 2 |
| GAUAGUGGC | 2 |
| ACUGCAGAU | 1 |
| GGUAACGGC | 1 |
| GUUGACUAC | 1 |
| G(OMC)UCAUAAC | 1 |
| GGUAAGAGC | 1 |
| GUUCGAAUC | 1 |
| AUGAGAAUU | 1 |
| CCAAUAGG | 1 |
| GGGAAACU | 1 |
| GCGAAAGC | 1 |
| UUGAAAAA | 1 |
| GCUUCAAAC | 1 |
| CUGACACG | 1 |
| CCUGCAAG | 1 |
| CCUACAAG | 1 |
| UAGAAAUA | 1 |
| GGGGAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAUGG | 2 |
| AUAGUGG | 2 |
| CUGCAGA | 1 |
| GUAACGG | 1 |
| UUGACUA | 1 |
| (OMC)UCAUAA | 1 |
| GUAAGAG | 1 |
| UUCGAAU | 1 |
| UGAGAAU | 1 |
| CAAUAG | 1 |
| GGAAAC | 1 |
| CGAAAG | 1 |
| UGAAAA | 1 |
| CUUCAAA | 1 |
| UGACAC | 1 |
| CUGCAA | 1 |
| CUACAA | 1 |
| AGAAAU | 1 |
| GGGAAC | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA related (6)
- GNRA with extra cWW (5)
- GNRA with near cWW (3)
- (2)
- T-loop related (2)
- tRNA anticodon loop (2)
- GNRA with extra tWH (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.52 | Max 0.95
Coloring options: