HL_1FG0_005

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1FG0|1|A|A|2302, 1FG0|1|A|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FG0_005 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.034

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1FG0|1|A|C|2298
1FG0|1|A|G|2299
1FG0|1|A|A|2300
1FG0|1|A|A|2301
1FG0|1|A|A|2302
1FG0|1|A|A|2303
1FG0|1|A|G|2304
1FG0|1|A|A|2305
1FG0|1|A|U|2306
1FG0|1|A|A|2307
1FG0|1|A|U|2308
1FG0|1|A|C|2309
1FG0|1|A|G|2310

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains