Motif HL_02042.3 Version HL_02042.3 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_059 | 4V9F | 0.9637 | 0 | 0 | LSU rRNA | U | 2389 | U | 2390 | C | 2391 | C | 2392 | C | 2393 | A | 2394 | A | 2395 | C | 2396 | G | 2397 | A | 2398 | G | 2399 | cWW | tSH | tHH | |
| 2 | HL_9E6Q_055 | 9E6Q | 0.8965 | 0 | 1 | LSU rRNA | U | 2467 | U | 2468 | G | 2469 | A | 2470 | A | 2471 | C | 2472 | G | 2473 | C | 2474 | A | 2475 | A | 2476 | G | 2477 | cWW | ntSH | ||
| 3 | HL_7A0S_053 | 7A0S | 0.1596 | 2 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | A | 2248 | U | 2249 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | ntHH | tWW |
| 4 | HL_8B0X_081 | 8B0X | 0.1263 | 2 | a | LSU rRNA | C | 2268 | U | 2269 | A | 2270 | A | 2271 | G | 2273 | A | 2274 | G | 2275 | U | 2276 | A | 2277 | A | 2278 | G | 2280 | cWW | ntSH | tHH | tWW |
| 5 | HL_4WF9_050 | 4WF9 | 0.1034 | 2 | X | LSU rRNA | C | 2291 | U | 2292 | A | 2293 | A | 2294 | A | 2296 | G | 2297 | G | 2298 | U | 2299 | A | 2300 | A | 2301 | G | 2303 | cWW | ntSH | tHH | tWW |
| 6 | HL_9DFE_052 | 9DFE | 0.1337 | 2 | 1A | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | A | 2269 | G | 2270 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW |
| 7 | HL_8GLP_060 | 8GLP | 0.1220 | 2 | L5 | LSU rRNA | U | 4210 | C | 4211 | A | 4212 | A | 4213 | C | 4215 | G | 4216 | G | 4217 | U | 4218 | A | 4219 | 6MZ | 4220 | G | 4222 | cWW | ntSH | tHH | tWW |
| 8 | HL_8OI5_051 | 8OI5 | 0.0801 | 2 | 1 | LSU rRNA | U | 2605 | U | 2606 | A | 2607 | A | 2608 | C | 2610 | G | 2611 | A | 2612 | U | 2613 | A | 2614 | A | 2615 | G | 2617 | cWW | ntSH | tHH | tWW |
| 9 | HL_9PN5_053 | 9PN5 | 0.0000 | 2 | A1 | LSU rRNA | U | 2633 | UR3 | 2634 | A | 2635 | A | 2636 | C | 2638 | G | 2639 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | tHH | tWW |
| 10 | HL_9H3G_056 | 9H3G | 0.0574 | 2 | A | LSU rRNA | U | 2632 | U | 2633 | A | 2634 | A | 2635 | A | 2637 | G | 2638 | A2M | 2639 | U | 2640 | A | 2641 | A | 2642 | G | 2644 | cWW | ntSH | tHH | tWW |
| 11 | HL_4V9F_056 | 4V9F | 0.0858 | 2 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2303 | G | 2304 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW |
| 12 | HL_9E6Q_052 | 9E6Q | 0.1268 | 2 | 1 | LSU rRNA | U | 2376 | G | 2377 | A | 2378 | A | 2379 | A | 2381 | G | 2382 | A | 2383 | U | 2384 | A | 2385 | U | 2386 | OMG | 2388 | cWW | tSH | tHH | tWW |
| 13 | HL_9AXU_051 | 9AXU | 0.1348 | 2 | 2 | LSU rRNA | U | 2728 | U | 2729 | A | 2730 | A | 2731 | A | 2733 | G | 2734 | A | 2735 | U | 2736 | A | 2737 | A | 2738 | G | 2740 | cWW | ntSH | ntWH | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAAAGGUAACG | 2 |
| UUCCCAACGAG | 1 |
| UUGAACGCAAG | 1 |
| CCAAAAUGUAACG | 1 |
| CUAAAGAGUAACG | 1 |
| UCAAACGGUACG | 1 |
| UUAAACGAUAACG | 1 |
| U(UR3)AAACGAUAACG | 1 |
| UUAAAAG(A2M)UAACG | 1 |
| CGAAAAGAUAUCG | 1 |
| UGAAAAGAUAUC(OMG) | 1 |
| UUAAAAGAUAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAAGGUAAC | 2 |
| GAAAAGAUAUC | 2 |
| UCCCAACGA | 1 |
| UGAACGCAA | 1 |
| CAAAAUGUAAC | 1 |
| UAAAGAGUAAC | 1 |
| CAAACGGUA(6MZ)C | 1 |
| UAAACGAUAAC | 1 |
| (UR3)AAACGAUAAC | 1 |
| UAAAAG(A2M)UAAC | 1 |
| UAAAAGAUAAC | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.33 | Max 0.99
Coloring options: