HL_1FKA_001

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAUCCUGG

Length

10 nucleotides

Bulged bases

1FKA|1|A|G|16, 1FKA|1|A|A|17

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FKA_001 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3015

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1FKA|1|A|U|13
1FKA|1|A|U|14
1FKA|1|A|G|16
1FKA|1|A|A|17
1FKA|1|A|U|18
1FKA|1|A|C|19
1FKA|1|A|C|20
1FKA|1|A|U|21
1FKA|1|A|G|22
1FKA|1|A|G|23

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5