HL_1FKA_023

3D structure

PDB id

1FKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

1FKA|1|A|A|1148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1FKA_023 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2466

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1FKA|1|A|C|1146
1FKA|1|A|G|1147
1FKA|1|A|A|1148
1FKA|1|A|A|1149
1FKA|1|A|A|1150
1FKA|1|A|G|1151

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains