3D structure

PDB id
1GAX (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAGCGGAAG
Length
9 nucleotides
Bulged bases
1GAX|1|D|C|916, 1GAX|1|D|G|917, 1GAX|1|D|G|918, 1GAX|1|D|A|919
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_07951.1
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

1GAX|1|D|C|913
1GAX|1|D|A|914
1GAX|1|D|G|915
1GAX|1|D|C|916
1GAX|1|D|G|917
1GAX|1|D|G|918
1GAX|1|D|A|919
1GAX|1|D|A|920
1GAX|1|D|G|921

Current chains

Chain D
TRNA(VAL)

Nearby chains

Chain B
VALYL-TRNA SYNTHETASE

Coloring options:

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