1GAX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1GAX_001 | 1/C/913:921 | tRNA D-loop | geometric HL_1GAX_004 NA | |
| HL_1GAX_002 | 1/C/930:938 | No text annotation | geometric HL_1GAX_005 NA | |
| HL_1GAX_003 | 1/C/952:960 | T-loop with 2 stacked bulged bases | geometric HL_1GAX_006 NA | |
| HL_1GAX_004 | 1/D/913:921 | tRNA D-loop | ||
| HL_1GAX_005 | 1/D/930:938 | No text annotation | ||
| HL_1GAX_006 | 1/D/952:960 | T-loop with 2 stacked bulged bases |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_1GAX_003 | 1/C/907:910, 1/C/924:926, 1/C/942:948, 1/C/964:965 | tRNA junction | homologous J4_1GAX_004 NA | |
| J4_1GAX_004 | 1/D/907:910, 1/D/924:926, 1/D/942:948, 1/D/964:965 | tRNA junction |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_1GAX_001 | No text annotation | ||
| J4_1GAX_002 | No text annotation |
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