HL_1GID_007

3D structure

PDB id

1GID (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

AUCUU

Length

5 nucleotides

Bulged bases

1GID|1|A|U|236, 1GID|1|A|C|237, 1GID|1|A|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1GID_007 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.0246

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

1GID|1|A|A|235
1GID|1|A|U|236
1GID|1|A|C|237
1GID|1|A|U|238
1GID|1|A|U|239

Current chains

Chain A

P4-P6 RNA RIBOZYME DOMAIN

Nearby chains