1GID Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1GID_001 | 1/A/149:154 | GNRA Not in a motif group | geometric HL_1G1X_001 HL_85603.1 | |
| HL_1GID_002 | 1/A/166:174 | No text annotation Not in a motif group | geometric HL_2R8S_002 HL_03333.1 | |
| HL_1GID_004 | 1/B/149:154 | GNRA HL_85603.1 | ||
| HL_1GID_005 | 1/B/166:174 | No text annotation HL_03333.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1GID_003 | No text annotation | ||
| HL_1GID_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1GID_002 | 1/A/110:111, 1/A/209:211 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.7 | |
| IL_1GID_003 | 1/A/112:116, 1/A/205:208 | UAA/GAN related Not in a motif group | geometric IL_2R8S_002 IL_77691.2 | |
| IL_1GID_004 | 1/A/121:127, 1/A/195:200 | No text annotation Not in a motif group | ||
| IL_1GID_006 | 1/A/134:136, 1/A/182:189 | cWH basepair with bulged bases Not in a motif group | geometric IL_2R8S_005 IL_70707.3 | |
| IL_1GID_007 | 1/A/223:227, 1/A/247:250 | Receptor of 11-nt loop-receptor motif Not in a motif group | geometric IL_3IGI_012 IL_44312.2 | |
| IL_1GID_009 | 1/B/110:111, 1/B/209:211 | Single bulged A IL_37497.7 | ||
| IL_1GID_010 | 1/B/112:116, 1/B/205:208 | UAA/GAN related IL_77691.2 | ||
| IL_1GID_013 | 1/B/134:136, 1/B/182:189 | cWH basepair with bulged bases IL_70707.3 | ||
| IL_1GID_014 | 1/B/223:227, 1/B/247:250 | Receptor of 11-nt loop-receptor motif IL_44312.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1GID_001 | Tandem non-canonical cWW pairs | ||
| IL_1GID_005 | Single bulged U | ||
| IL_1GID_008 | Tandem non-canonical cWW pairs | ||
| IL_1GID_011 | Kink-turn related | ||
| IL_1GID_012 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1GID_001 | 1/A/138:141, 1/A/162:165, 1/A/175:180 | No text annotation Not in a motif group | ||
| J3_1GID_002 | 1/B/138:141, 1/B/162:165, 1/B/175:180 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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