HL_1GTR_001

3D structure

PDB id

1GTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS OF ANTICODON LOOP RECOGNITION BY GLUTAMINYL-TRNA SYNTHETASE

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAGCGGUAAG

Length

11 nucleotides

Bulged bases

1GTR|1|B|C|16, 1GTR|1|B|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1GTR_001 not in the Motif Atlas

Geometric match to HL_1QTQ_001

Geometric discrepancy: 0.1305

The information below is about HL_1QTQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.1

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

4

Unit IDs

1GTR|1|B|C|12
1GTR|1|B|A|13
1GTR|1|B|A|14
1GTR|1|B|G|15
1GTR|1|B|C|16
1GTR|1|B|G|18
1GTR|1|B|G|19
1GTR|1|B|U|20
1GTR|1|B|A|21
1GTR|1|B|A|22
1GTR|1|B|G|23

Current chains

Chain B

RNA (74-MER)

Nearby chains

Chain A

GLUTAMINYL-tRNA SYNTHETASE