HL_1H3E_004

3D structure

PDB id

1H3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

G(5MU)(PSU)CG(MAD)AUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, MAD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

1H3E|1|B|G|53
1H3E|1|B|5MU|54
1H3E|1|B|PSU|55
1H3E|1|B|C|56
1H3E|1|B|G|57
1H3E|1|B|MAD|58
1H3E|1|B|A|59
1H3E|1|B|U|60
1H3E|1|B|C|61

Current chains

Chain B

WILD-TYPE TRNATYR(GUA)

Nearby chains