HL_1H3E_008

3D structure

PDB id

1H3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tyrosyl-tRNA synthetase from Thermus thermophilus complexed with wild-type tRNAtyr(GUA) and with ATP and tyrosinol

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

G(5MU)(PSU)CG(MAD)AUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, MAD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1H3E_008 not in the Motif Atlas

Geometric match to HL_3KFU_006

Geometric discrepancy: 0.1657

The information below is about HL_3KFU_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

1H3E|1|B|G|53||||4_646
1H3E|1|B|5MU|54||||4_646
1H3E|1|B|PSU|55||||4_646
1H3E|1|B|C|56||||4_646
1H3E|1|B|G|57||||4_646
1H3E|1|B|MAD|58||||4_646
1H3E|1|B|A|59||||4_646
1H3E|1|B|U|60||||4_646
1H3E|1|B|C|61||||4_646

Current chains

Chain B

WILD-TYPE TRNATYR(GUA)

Nearby chains