HL_1HLX_019

3D structure

PDB id

1HLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HLX_019 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1802

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

1HLX|19|A|C|8
1HLX|19|A|U|9
1HLX|19|A|U|10
1HLX|19|A|C|11
1HLX|19|A|G|12
1HLX|19|A|G|13

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*AP*UP*AP*AP*CP*UP*UP*CP*GP*GP*UP*UP*GP*UP*CP*CP*C)-3')

Nearby chains