HL_61337.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	2-4
1	HL_7A0S_019	7A0S	0.5666	1		X	LSU rRNA	U	622	G	623	A	624	A	626	A	627	cWW	ntsS
2	HL_3DH3_003	3DH3	0.6889	1	UNCG	F	stem loop fragment of E. Coli 23S RNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW
3	HL_4U7U_001	4U7U	0.5125	1	UNCG	L	crRNA	C	51	G	52	C	54	A	55	G	56	cWW	tSW
4	HL_4LGT_001	4LGT	0.2899	1	UNCG	E	stem-loop of 23S rRNA	C	2594	G	2595	G	2597	A	2598	G	2599	cWW	tSW
5	HL_7LYF_002	7LYF	0.3626	2	UNCG variation	A	Dengue virus SLA	A	59	C	60	G	62	A	63	U	65	cWW
6	HL_3V7E_005	3V7E	0.2969	1	UNCG (H)	D	SAM-I riboswitch	C	265	U	266	C	268	G	269	G	270	cWW
7	HL_9H3G_069	9H3G	0.2812	0		A	LSU rRNA	C	3185	U	3186	U	3187	A	3188	G	3189	cWW
8	HL_8B0X_066	8B0X	0.2910	1	UNCG (H)	a	LSU rRNA	C	1535	U	1536	C	1538	G	1539	G	1540	cWW	ntSW
9	HL_7MLW_002	7MLW	0.2719	1	UNCG	F	Guanidine-I riboswitch	G	80	U	81	C	83	G	84	C	85	ncWW	tSWa
10	HL_8SP9_003	8SP9	0.1980	1	UNCG	C	Enterovirus 5' cloverleaf cis-acting replication element	U	90	C	91	C	93	G	94	G	95	cWW	tSWa
11	HL_9D9O_001	9D9O	0.2271	1		R	Enterovirus 5' cloverleaf cis-acting replication element	U	62	C	63	C	65	G	66	G	67	cWW	tSW
12	HL_9D9P_003	9D9P	0.2790	1		R	Enterovirus 5' cloverleaf cis-acting replication element	U	62	C	63	C	65	G	66	G	67	cWW	tSW
13	HL_7A0S_042	7A0S	0.1815	1	UNCG	X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
14	HL_9HRF_001	9HRF	0.2130	1		A	Class V (UU) GTP aptamer	C	28	U	29	C	31	G	32	G	33	cWW	ntSW
15	HL_7RGU_005	7RGU	0.2000	1	UNCG	F	Modified SL3 of RocR	C	10	U	11	C	13	G	14	G	15	ncWW	tSW
16	HL_8T29_002	8T29	0.1510	1	UNCG	R	RNA (90-MER)	C	58	U	59	C	61	G	62	G	63	cWW	tSW
17	HL_7L0Z_001	7L0Z	0.1217	1	UNCG	G	RNA (69-MER)	G	30	U	31	C	33	G	34	C	35	cWW	tSW
18	HL_8K7W_001	8K7W	0.0959	1	UNCG	A	RNA (49-MER)	A	20	U	21	C	23	G	24	U	25	cWW	tSW
19	HL_1YLS_001	1YLS	0.1270	1	UNCG	B	RNA Diels-Alder ribozyme	C	220	U	221	C	223	G	224	G	225	cWW	tSW
20	HL_3U4M_001	3U4M	0.1359	1	UNCG	B	LSU rRNA	C	2143	U	2144	C	2146	G	2147	G	2148	cWW	tSW
21	HL_2HW8_001	2HW8	0.1068	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
22	HL_7OAX_001	7OAX	0.1000	1	UNCG	A	Chili RNA Aptamer	G	21	U	22	C	24	G	25	C	26	cWW	tSW
23	HL_1I6U_001	1I6U	0.1603	1	UNCG	C	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
24	HL_4PMI_004	4PMI	0.1099	1	UNCG	A	Rev-Response-Element RNA	C	53	U	54	C	56	G	57	G	58	cWW	tSW
25	HL_8B0X_010	8B0X	0.1145	1	UNCG (H)	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
26	HL_4LFB_011	4LFB	0.1068	1	UNCG	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
27	HL_4WF9_040	4WF9	0.1620	1	UNCG	X	LSU rRNA	C	1735	U	1736	C	1738	G	1739	G	1740	cWW	tSW
28	HL_8GLP_125	8GLP	0.1548	1	UNCG (H)	S2	SSU rRNA	OMC	462	C	463	A	465	G	466	G	467	cWW	tSW
29	HL_8B0X_028	8B0X	0.1454	1	UNCG (H)	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
30	HL_8B0X_070	8B0X	0.1104	1	UNCG (H)	a	LSU rRNA	C	1693	U	1694	C	1696	G	1697	G	1698	cWW	tSW
31	HL_9E6Q_042	9E6Q	0.1228	1	UNCG (H)	1	LSU rRNA	C	1835	U	1836	C	1838	G	1839	G	1840	cWW	tSW
32	HL_8ID2_001	8ID2	0.0941	1	UNCG	C	RNA (24-mer)	G	10	U	11	C	13	G	14	C	15	cWW	tSW
33	HL_4V9F_044	4V9F	0.1022	1	UNCG	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
34	HL_8B0X_008	8B0X	0.0939	1	UNCG (H)	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
35	HL_4LFB_009	4LFB	0.1150	1	UNCG	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
36	HL_8OI5_039	8OI5	0.1474	1	UNCG (H)	1	LSU rRNA	C	1919	U	1920	C	1922	G	1923	G	1924	cWW	tSW
37	HL_8P9A_154	8P9A	0.1262	1	UNCG	AR	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	tSW
38	HL_9AXU_040	9AXU	0.1230	1	UNCG (H)	2	LSU rRNA	C	1978	U	1979	C	1981	G	1982	G	1983	cWW	tSW
39	HL_9H3G_047	9H3G	0.1105	1		A	LSU rRNA	C	1925	U	1926	C	1928	G	1929	G	1930	cWW	tSW
40	HL_8GLP_047	8GLP	0.1000	1		L5	LSU rRNA	C	2872	U	2873	C	2875	OMG	2876	G	2877	cWW	tSW
41	HL_9H3G_087	9H3G	0.1000	1		h1	SSU rRNA	OMC	416	C	417	A	419	G	420	G	421	cWW	tSW
42	HL_1KUQ_001	1KUQ	0.1335	1	UNCG	B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
43	HL_5Y85_004	5Y85	0.0000	1	UNCG	D	DNA/RNA (50-MER)	C	28	U	29	C	31	G	32	G	33	cWW	tSW
44	HL_9FN2_003	9FN2	0.0929	1		B	SAMURI-SAM	G	20	U	21	C	23	G	24	C	25	cWW	tSW
45	HL_9DFE_040	9DFE	0.0994	1	UNCG	1A	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
46	HL_4JF2_003	4JF2	0.1005	1	UNCG	A	PreQ1-II Riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
47	HL_5LYS_002	5LYS	0.0878	1	UNCG	B	7SK RNA	C	48	U	48\|\|\|A	C	48\|\|\|C	G	48\|\|\|D	G	60	cWW	tSW
48	HL_6SY6_001	6SY6	0.0954	1	UNCG	D	RNA (36-MER)	C	19	U	20	C	22	G	23	G	24	cWW	tSW
49	HL_9H3G_019	9H3G	0.1345	1		A	LSU rRNA	C	599	C	600	C	602	G	603	G	604	cWW	tSW
50	HL_6QN3_003	6QN3	0.1160	1	UNCG	B	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
51	HL_4AY2_001	4AY2	0.1248	1	UNCG	C	5'-R-PPP(GPGPCPGPCPGPGPCPUPUPCPGPGPCP CPGPCPGPCP*C)-3'	C	8	U	9	C	11	G	12	G	13	cWW	tSW
52	HL_1UN6_003	1UN6	0.1102	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
53	HL_7KKV_002	7KKV	0.1216	1	UNCG	B	OLE* RNA	C	517	U	518	C	520	G	521	G	522	cWW	tSW
54	HL_8F5G_001	8F5G	0.0987	1	UNCG	D	RNA	C	12	U	13	C	15	G	16	G	17	cWW	tSW
55	HL_5D5L_003	5D5L	0.0863	1	UNCG	A	PreQ1-II riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
56	HL_4PDB_001	4PDB	0.1023	1	UNCG	I	SELEX RNA aptamer	C	17	U	18	C	20	G	21	G	22	cWW	tSW
57	HL_6QN3_001	6QN3	0.1041	1	UNCG	A	Glutamine-II	C	9	U	10	C	12	G	13	G	14	cWW	tSW
58	HL_4LFB_031	4LFB	0.1127	1	UNCG	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
59	HL_8B0X_036	8B0X	0.1556	1		a	LSU rRNA	U	137	U	138	C	140	G	141	A	142	cWW	tSW
60	HL_8P9A_200	8P9A	0.1564	1	UNCG	sR	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
61	HL_8CRE_201	8CRE	0.1095	1	UNCG	CM	SSU rRNA	C	412	C	413	A	415	G	416	G	417	cWW	tSW
62	HL_3IGI_008	3IGI	0.1745	1	UNCG	A	Group II catalytic intron D1-D4-3	G	338	U	339	C	341	G	342	C	343	cWW	tSW
63	HL_6DLR_002	6DLR	0.1540	1	UNCG	A	Guanidine-I riboswitch	A	61	U	62	C	64	G	65	U	66	cWW	tSW
64	HL_6KYV_004	6KYV	0.1720	1	UNCG	G	RNA (22-mer)	C	9	U	10	C	12	G	13	G	14	cWW	tSW
65	HL_6CK5_001	6CK5	0.1729	1	UNCG	A	Guanidine-I riboswitch	A	27	U	28	U	30	G	31	U	32	cWW	tSW
66	HL_1NBS_006	1NBS	0.2077	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
67	HL_6JQ6_004	6JQ6	0.2704	1	UNCG	U	Hatchet ribozyme	C	45	U	46	C	48	G	49	G	50	cWW
68	HL_6VMY_004	6VMY	0.4926	2	UNCG variation	A	Cobalamin riboswitch	C	287	C	288	A	290	G	291	G	293	cWW	ncWH
69	HL_8S95_003	8S95	0.5670	2	UNCG variation	C	Enterovirus 5' cloverleaf cis-acting replication element	C	67	C	68	C	70	G	71	G	73	cWW	ncWH
70	HL_8P9A_194	8P9A	0.6243	1	UNCG variation	sR	SSU rRNA	C	230	U	231	C	233	G	234	G	235	ncWW
71	HL_9H3G_092	9H3G	0.6060	1		h1	SSU rRNA	C	780	C	781	U	782	A	783	G	785	cWW
72	HL_4UYK_003	4UYK	0.5457	1		R	SRP RNA	U	98	G	99	U	100	A	101	G	103	cWW	ntSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	36
CUACGG	5
GUUCGC	5
UCACGG	3
CGUGAG	2
AUUCGU	2
(OMC)CAAGG	2
CCAAGG	2
UGAAAA	1
CGCCAG	1
ACAGAUU	1
CUUAG	1
GUACGC	1
CUCGG	1
CUCCGG	1
CUUCG	1
CCUCGG	1
UUUCGA	1
AUUUGU	1
CCAAGCG	1
CCACGUG	1
CCUACG	1
UGUAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	44
UACG	6
CAAG	4
CACG	3
GUGA	2
GAAA	1
GCCA	1
CAGAU	1
UUA	1
U(UMS)CG	1
UCCG	1
UUC(OMG)	1
CUCG	1
UUUG	1
CAAGC	1
CACGU	1
CUAC	1
GUAA	1

Release history

Release	4.7	4.8
Date	2026-02-25	2026-03-25
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_61337.5 Version HL_61337.5 of this group appears in releases 4.7 to 4.8 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_61337.5 Version HL_61337.5 of this group appears in releases 4.7 to 4.8

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Csv

Json