HL_1HLX_029

3D structure

PDB id

1HLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACUUCGGU

Length

8 nucleotides

Bulged bases

1HLX|10|A|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HLX_029 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3098

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

1HLX|10|A|A|7
1HLX|10|A|C|8
1HLX|10|A|U|9
1HLX|10|A|U|10
1HLX|10|A|C|11
1HLX|10|A|G|12
1HLX|10|A|G|13
1HLX|10|A|U|14

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*AP*UP*AP*AP*CP*UP*UP*CP*GP*GP*UP*UP*GP*UP*CP*CP*C)-3')

Nearby chains