Motif HL_83003.1 Version HL_83003.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7MLW_004 | 7MLW | 0.4255 | 1 | F | Guanidine-I riboswitch | C | 79 | G | 80 | U | 81 | C | 83 | G | 84 | C | 85 | G | 86 | cWW | ncWW | tSWa | |
| 2 | HL_5TBW_021 | 5TBW | 0.1021 | 2 | 1 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |
| 3 | HL_8C3A_021 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |
| 4 | HL_6CF2_001 | 6CF2 | 0.2308 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||
| 5 | HL_5H9F_001 | 5H9F | 0.6050 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWw | ||
| 6 | HL_4WF9_069 | 4WF9 | 0.7398 | 2 | X | LSU rRNA | A | 2235 | C | 2236 | U | 2237 | A | 2239 | C | 2241 | G | 2242 | U | 2243 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 2 |
| CGUUCGCG | 1 |
| ACUUCGGU | 1 |
| GCGCCAGC | 1 |
| ACUUAUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 2 |
| GUUCGC | 1 |
| CUUCGG | 1 |
| CGCCAG | 1 |
| CUUAUCG | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWW-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.93
Coloring options: