HL_1HNX_015

3D structure

PDB id

1HNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HNX_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0814

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1HNX|1|A|C|689
1HNX|1|A|G|690
1HNX|1|A|G|691
1HNX|1|A|U|692
1HNX|1|A|G|693
1HNX|1|A|A|694
1HNX|1|A|A|695
1HNX|1|A|A|696
1HNX|1|A|U|697
1HNX|1|A|G|698

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain K

30S RIBOSOMAL PROTEIN S11