HL_1HNX_023

3D structure

PDB id

1HNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HNX_023 not in the Motif Atlas

Geometric match to HL_5J7L_004

Geometric discrepancy: 0.1189

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1HNX|1|A|C|1030
1HNX|1|A|G|1030|||A
1HNX|1|A|C|1030|||B
1HNX|1|A|G|1030|||C
1HNX|1|A|A|1030|||D
1HNX|1|A|G|1031

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains