HL_1HVU_002

3D structure

PDB id

1HVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE COMPLEXED WITH A 33-BASE NUCLEOTIDE RNA PSEUDOKNOT

Experimental method

X-RAY DIFFRACTION

Resolution

4.75 Å

Loop

Sequence

GUUUUCAGUC

Length

10 nucleotides

Bulged bases

1HVU|1|F|G|18, 1HVU|1|F|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1HVU_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2034

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1HVU|1|F|G|11
1HVU|1|F|U|12
1HVU|1|F|U|13
1HVU|1|F|U|14
1HVU|1|F|U|15
1HVU|1|F|C|16
1HVU|1|F|A|17
1HVU|1|F|G|18
1HVU|1|F|U|19
1HVU|1|F|C|20

Current chains

Chain F

RNA (33 NUCLEOTIDE RNA PSEUDOKNOT)

Nearby chains

Chain D

PROTEIN (HIV-1 REVERSE TRANSCRIPTASE)

Chain E

PROTEIN (HIV-1 REVERSE TRANSCRIPTASE)