HL_1I3Y_007

3D structure

PDB id

1I3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA.

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

1I3Y|7|A|U|10

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1I3Y_007 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2652

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

1I3Y|7|A|C|7
1I3Y|7|A|OMU|8
1I3Y|7|A|G|9
1I3Y|7|A|U|10
1I3Y|7|A|U|11
1I3Y|7|A|C|12
1I3Y|7|A|G|13

Current chains

Chain A

5'-R(*GP*GP*CP*UP*GP*GP*CP*(OMU)P*GP*UP*UP*CP*GP*CP*CP*AP*GP*CP*C)-3'

Nearby chains