HL_1I97_027

3D structure

PDB id

1I97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Experimental method

X-RAY DIFFRACTION

Resolution

4.5 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1I97_027 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.2233

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1I97|1|A|G|1246
1I97|1|A|G|1247
1I97|1|A|C|1248
1I97|1|A|A|1249
1I97|1|A|A|1250
1I97|1|A|C|1251

Current chains

Chain A

16S RRNA

Nearby chains

Chain M

30S RIBOSOMAL PROTEIN S13

Chain U

30S RIBOSOMAL PROTEIN THX