HL_1IBK_030

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

GAUCAGCCAUGC

Length

12 nucleotides

Bulged bases

1IBK|1|A|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IBK_030 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.0805

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

1IBK|1|A|G|1356
1IBK|1|A|A|1357
1IBK|1|A|U|1358
1IBK|1|A|C|1359
1IBK|1|A|A|1360
1IBK|1|A|G|1361
1IBK|1|A|C|1361|||A
1IBK|1|A|C|1362
1IBK|1|A|A|1363
1IBK|1|A|U|1364
1IBK|1|A|G|1365
1IBK|1|A|C|1366

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain I

30S RIBOSOMAL PROTEIN S9

Chain J

30S RIBOSOMAL PROTEIN S10

Chain M

30S RIBOSOMAL PROTEIN S13

Chain N

30S RIBOSOMAL PROTEIN S14

Chain V

30S RIBOSOMAL PROTEIN THX