Motif HL_86432.1 Version HL_86432.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 3-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LFB_030 | 4LFB | 0.8329 | 3 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | A | 1363 | C | 1366 | cWW | tWW | ||
| 2 | HL_8B0X_027 | 8B0X | 0.8218 | 2 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | C | 1366 | cWW | tWW | ||
| 3 | HL_8P9A_199 | 8P9A | 0.0000 | 3 | sR | SSU rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 401 | G | 404 | cWW | tWH | tWH | |
| 4 | HL_8CRE_200 | 8CRE | 0.0610 | 3 | CM | SSU rRNA | C | 391 | C | 392 | U | 393 | G | 394 | A | 395 | G | 396 | A | 397 | A | 399 | G | 402 | cWW | tWH | tWH | |
| 5 | HL_8GLP_093 | 8GLP | 0.0642 | 3 | S2 | SSU rRNA | C | 441 | C | 442 | U | 443 | G | 444 | A | 445 | G | 446 | A | 447 | A | 449 | G | 452 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 3 |
| GAUCAGCCAUGC | 1 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 3 |
| AUCAGCCAUG | 1 |
| AUCAGAAUG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.42 | Max 0.84
Coloring options: