HL_1IBL_033
3D structure
- PDB id
- 1IBL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.11 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1IBL_033 not in the Motif Atlas
- Geometric match to HL_5IB8_208
- Geometric discrepancy: 0.2516
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
1IBL|1|Y|G|30
1IBL|1|Y|A|31
1IBL|1|Y|U|32
1IBL|1|Y|U|33
1IBL|1|Y|G|34
1IBL|1|Y|A|35
1IBL|1|Y|A|36
1IBL|1|Y|A|37
1IBL|1|Y|A|38
1IBL|1|Y|U|39
1IBL|1|Y|C|40
Current chains
- Chain Y
- ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Z
- A-SITE MESSENGER RNA FRAGMENT
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