HL_1IBL_033

3D structure

PDB id

1IBL (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GAUUGAAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IBL_033 not in the Motif Atlas

Geometric match to HL_5IB8_208

Geometric discrepancy: 0.2516

The information below is about HL_5IB8_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36684.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1IBL|1|Y|G|30
1IBL|1|Y|A|31
1IBL|1|Y|U|32
1IBL|1|Y|U|33
1IBL|1|Y|G|34
1IBL|1|Y|A|35
1IBL|1|Y|A|36
1IBL|1|Y|A|37
1IBL|1|Y|A|38
1IBL|1|Y|U|39
1IBL|1|Y|C|40

Current chains

Chain Y

ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Z

A-SITE MESSENGER RNA FRAGMENT