Motif HL_14063.2 Version HL_14063.2 of this group appears in releases 4.1 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_039 | 4V7M | 0.4227 | 0 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW |
| 2 | HL_5IB8_208 | 5IB8 | 0.0000 | 0 | 1L | tRNA | G | 30 | A | 31 | C | 32 | U | 33 | U | 34 | U | 35 | U | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ntSH | |
| 3 | HL_7K16_002 | 7K16 | 0.3434 | 0 | P | RNA (51-MER) | G | 27 | C | 28 | U | 29 | U | 30 | G | 31 | A | 32 | G | 33 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | ncWB | |
| 4 | HL_4UYK_001 | 4UYK | 0.4360 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | ||
| 5 | HL_4WSM_225 | 4WSM | 0.5100 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | |
| 6 | HL_6GSK_218 | 6GSK | 0.4699 | 0 | 3L | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncSW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUUGUGAUUC | 1 |
| GACUUUUAAUC | 1 |
| GCUUGAGAACC | 1 |
| GGUUCGGCGUC | 1 |
| CCUUGAGGUGG | 1 |
| CCUUGGUAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGUGAUU | 1 |
| ACUUUUAAU | 1 |
| CUUGAGAAC | 1 |
| GUUCGGCGU | 1 |
| CUUGAGGUG | 1 |
| CUUGGUAAG | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.34 | Avg 0.42 | Max 0.66
Coloring options: