HL_1IBM_032
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- GGGAAACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1IBM_032 not in the Motif Atlas
- Homologous match to HL_6CZR_215
- Geometric discrepancy: 0.2301
- The information below is about HL_6CZR_215
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA with extra near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
1IBM|1|A|G|157
1IBM|1|A|G|158
1IBM|1|A|G|159
1IBM|1|A|A|160
1IBM|1|A|A|161
1IBM|1|A|A|162
1IBM|1|A|C|163
1IBM|1|A|U|164
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: