HL_1IBM_033
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1IBM_033 not in the Motif Atlas
- Geometric match to HL_6ORD_036
- Geometric discrepancy: 0.1444
- The information below is about HL_6ORD_036
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 47
Unit IDs
1IBM|1|Y|A|31
1IBM|1|Y|U|32
1IBM|1|Y|U|33
1IBM|1|Y|G|34
1IBM|1|Y|A|35
1IBM|1|Y|A|36
1IBM|1|Y|A|37
1IBM|1|Y|A|38
1IBM|1|Y|U|39
Current chains
- Chain Y
- ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain Z
- A-SITE MESSENGER RNA FRAGMENT
Coloring options: