HL_1IVS_004

3D structure

PDB id

1IVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

1IVS|1|D|C|916, 1IVS|1|D|G|917, 1IVS|1|D|G|918, 1IVS|1|D|A|919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1IVS_004 not in the Motif Atlas

Geometric match to HL_1GAX_004

Geometric discrepancy: 0.0428

The information below is about HL_1GAX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_07951.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

1IVS|1|D|C|913
1IVS|1|D|A|914
1IVS|1|D|G|915
1IVS|1|D|C|916
1IVS|1|D|G|917
1IVS|1|D|G|918
1IVS|1|D|A|919
1IVS|1|D|A|920
1IVS|1|D|G|921

Current chains

Chain D

tRNA (Val)

Nearby chains

Chain B

Valyl-tRNA synthetase