HL_1J1U_004

3D structure

PDB id

1J1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

1J1U|1|B|G|519||||4_556, 1J1U|1|B|G|520||||4_556, 1J1U|1|B|U|521||||4_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_10751.2

Basepair signature

cWW-cWS-R-R-R-R

Number of instances in this motif group

7

Unit IDs

1J1U|1|B|C|513||||4_556
1J1U|1|B|A|514||||4_556
1J1U|1|B|G|515||||4_556
1J1U|1|B|C|516||||4_556
1J1U|1|B|C|517||||4_556
1J1U|1|B|U|518||||4_556
1J1U|1|B|G|519||||4_556
1J1U|1|B|G|520||||4_556
1J1U|1|B|U|521||||4_556
1J1U|1|B|A|522||||4_556
1J1U|1|B|G|523||||4_556

Current chains

Chain B

tRNA(Tyr)

Nearby chains