Motif HL_10751.2 Version HL_10751.2 of this group appears in releases 3.3 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WT8_215 | 4WT8 | 0.4919 | 3 | tRNA D-loop | D4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 18 | A | 22 | G | 23 | cWW | ncWS | |
| 2 | HL_4V9Q_213 | 4V9Q | 0.2789 | 3 | tRNA D-loop | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncSH | |
| 3 | HL_6CFJ_106 | 6CFJ | 0.2510 | 3 | tRNA D-loop | 1x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | |
| 4 | HL_1H4S_001 | 1H4S | 0.2444 | 3 | tRNA D-loop | T | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | A | 21 | G | 22 | cWW | ||
| 5 | HL_1J1U_004 | 1J1U | 0.0000 | 3 | tRNA D-loop | B | tRNA | C | 513||||4_556 | A | 514||||4_556 | G | 515||||4_556 | C | 516||||4_556 | C | 517||||4_556 | U | 518||||4_556 | A | 522||||4_556 | G | 523||||4_556 | cWW | ncWS | |
| 6 | HL_1J1U_001 | 1J1U | 0.0000 | 3 | tRNA D-loop | B | tRNA | C | 513 | A | 514 | G | 515 | C | 516 | C | 517 | U | 518 | A | 522 | G | 523 | cWW | ncWS | |
| 7 | HL_2ZUE_001 | 2ZUE | 0.2798 | 4 | tRNA D-loop | B | tRNA | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 5 |
| CAGCCCGGUAG | 1 |
| UAGCCAGGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 5 |
| AGCCCGGUA | 1 |
| AGCCAGGACA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (7)
- Basepair signature
- cWW-cWS-R-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.29 | Max 0.57
Coloring options: