HL_1J2B_005

3D structure

PDB id

1J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGUUCAAGUCCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J2B_005 not in the Motif Atlas

Homologous match to HL_5E81_248

Geometric discrepancy: 0.4367

The information below is about HL_5E81_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60848.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1J2B|1|D|G|952
1J2B|1|D|G|953
1J2B|1|D|G|954
1J2B|1|D|U|955
1J2B|1|D|U|956
1J2B|1|D|C|957
1J2B|1|D|A|958
1J2B|1|D|A|959
1J2B|1|D|G|960
1J2B|1|D|U|961
1J2B|1|D|C|962
1J2B|1|D|C|963
1J2B|1|D|C|964

Current chains

Chain D

tRNA(Val)

Nearby chains

Chain B

Archaeosine tRNA-guanine transglycosylase