1J2B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1J2B_001 | 1/C/932:940 | tRNA anticodon loop HL_80599.2 | ||
| HL_1J2B_002 | 1/C/954:962 | T-loop with 2 stacked bulged bases HL_28252.8 | ||
| HL_1J2B_003 | 1/D/932:940 | No text annotation | geometric HL_1J2B_001 HL_80599.2 | |
| HL_1J2B_005 | 1/D/952:964 | No text annotation | ||
| HL_1J2B_004 | 1/D/954:962 | T-loop with 2 stacked bulged bases | geometric HL_4V9Q_215 HL_28252.8 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1J2B_001 | 1/C/926:929, 1/C/943:947 | No text annotation IL_68909.1 | ||
| IL_1J2B_003 | 1/D/926:928, 1/D/944:947 | Major groove platform with extra pair | geometric IL_4KQY_003 IL_15698.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1J2B_002 | No text annotation | ||
| IL_1J2B_005 | No text annotation | ||
| IL_1J2B_004 | Self complementary |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1J2B_001 | 1/C/907:924, 1/C/949:950, 1/C/966:967 | No text annotation J3_63687.1 |
Problematic loops
No problematic loops
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