HL_1J5A_015

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_015 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.1541

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1J5A|1|A|C|498
1J5A|1|A|G|499
1J5A|1|A|G|500
1J5A|1|A|G|501
1J5A|1|A|A|502
1J5A|1|A|G|503

Current chains

Chain A

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L22