HL_1J5A_020

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

1J5A|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_020 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.469

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73884.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1J5A|1|A|C|651
1J5A|1|A|C|652
1J5A|1|A|G|653
1J5A|1|A|A|654
1J5A|1|A|A|655
1J5A|1|A|U|656
1J5A|1|A|A|657
1J5A|1|A|G|658

Current chains

Chain A

23S RRNA

Nearby chains