HL_1J5A_022

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1J5A|1|A|U|760, 1J5A|1|A|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.3268

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1J5A|1|A|U|757
1J5A|1|A|G|758
1J5A|1|A|C|759
1J5A|1|A|U|760
1J5A|1|A|G|761
1J5A|1|A|A|762
1J5A|1|A|A|763
1J5A|1|A|A|764
1J5A|1|A|C|765
1J5A|1|A|A|766

Current chains

Chain A

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L22

Chain M

RIBOSOMAL PROTEIN L32