HL_1J5A_030

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCGAAGC

Length

7 nucleotides

Bulged bases

1J5A|1|A|G|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_030 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3943

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

1J5A|1|A|G|1184
1J5A|1|A|C|1185
1J5A|1|A|G|1186
1J5A|1|A|A|1187
1J5A|1|A|A|1188
1J5A|1|A|G|1189
1J5A|1|A|C|1190

Current chains

Chain A

23S RRNA

Nearby chains