HL_1J5A_037

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCAGAAAAUCUAC

Length

15 nucleotides

Bulged bases

1J5A|1|A|A|1507, 1J5A|1|A|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_037 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.141

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

1J5A|1|A|G|1503
1J5A|1|A|G|1504
1J5A|1|A|U|1505
1J5A|1|A|C|1506
1J5A|1|A|A|1507
1J5A|1|A|G|1508
1J5A|1|A|A|1509
1J5A|1|A|A|1510
1J5A|1|A|A|1511
1J5A|1|A|A|1512
1J5A|1|A|U|1513
1J5A|1|A|C|1514
1J5A|1|A|U|1515
1J5A|1|A|A|1516
1J5A|1|A|C|1517

Current chains

Chain A

23S RRNA

Nearby chains