HL_1J5A_043

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUUCGC

Length

7 nucleotides

Bulged bases

1J5A|1|A|U|1733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_043 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3615

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

1J5A|1|A|G|1730
1J5A|1|A|C|1731
1J5A|1|A|U|1732
1J5A|1|A|U|1733
1J5A|1|A|C|1734
1J5A|1|A|G|1735
1J5A|1|A|C|1736

Current chains

Chain A

23S RRNA

Nearby chains