HL_1J5A_050

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGGGAGAAACUGGCCGGUCGGUGGCCACC

Length

31 nucleotides

Bulged bases

1J5A|1|A|G|2110, 1J5A|1|A|C|2125, 1J5A|1|A|G|2132

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|G|2103
1J5A|1|A|G|2104
1J5A|1|A|U|2105
1J5A|1|A|G|2106
1J5A|1|A|G|2107
1J5A|1|A|G|2108
1J5A|1|A|A|2109
1J5A|1|A|G|2110
1J5A|1|A|A|2117
1J5A|1|A|A|2118
1J5A|1|A|A|2119
1J5A|1|A|C|2120
1J5A|1|A|U|2121
1J5A|1|A|G|2122
1J5A|1|A|G|2123
1J5A|1|A|C|2124
1J5A|1|A|C|2125
1J5A|1|A|G|2132
1J5A|1|A|G|2133
1J5A|1|A|U|2134
1J5A|1|A|C|2135
1J5A|1|A|G|2136
1J5A|1|A|G|2137
1J5A|1|A|U|2138
1J5A|1|A|G|2139
1J5A|1|A|G|2140
1J5A|1|A|C|2157
1J5A|1|A|C|2158
1J5A|1|A|A|2159
1J5A|1|A|C|2160
1J5A|1|A|C|2161

Current chains

Chain A

23S RRNA

Nearby chains