HL_1J5A_052

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1J5A|1|A|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1393

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

1J5A|1|A|C|2227
1J5A|1|A|U|2228
1J5A|1|A|G|2229
1J5A|1|A|G|2230
1J5A|1|A|G|2231
1J5A|1|A|G|2232
1J5A|1|A|C|2233
1J5A|1|A|G|2234
1J5A|1|A|G|2235

Current chains

Chain A

23S RRNA

Nearby chains