HL_1J5A_065

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1J5A|1|A|A|2730, 1J5A|1|A|G|2731, 1J5A|1|A|C|2735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4359

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1J5A|1|A|C|2725
1J5A|1|A|U|2726
1J5A|1|A|G|2727
1J5A|1|A|A|2728
1J5A|1|A|A|2729
1J5A|1|A|A|2730
1J5A|1|A|G|2731
1J5A|1|A|C|2732
1J5A|1|A|A|2733
1J5A|1|A|U|2734
1J5A|1|A|C|2735
1J5A|1|A|U|2736
1J5A|1|A|A|2737
1J5A|1|A|A|2738
1J5A|1|A|G|2739

Current chains

Chain A

23S RRNA

Nearby chains