HL_1J5A_080

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1J5A|1|A|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1J5A_080 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2054

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

1J5A|1|A|U|575
1J5A|1|A|A|576
1J5A|1|A|U|577
1J5A|1|A|U|578
1J5A|1|A|G|579
1J5A|1|A|A|580
1J5A|1|A|A|581
1J5A|1|A|G|582
1J5A|1|A|C|583
1J5A|1|A|A|584

Current chains

Chain A

23S RRNA

Nearby chains