HL_1JGO_008
3D structure
- PDB id
- 1JGO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.6 Å
Loop
- Sequence
- AUUUUUAUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1JGO_008 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.3342
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
1JGO|1|D|A|31
1JGO|1|D|U|32
1JGO|1|D|U|33
1JGO|1|D|U|34
1JGO|1|D|U|35
1JGO|1|D|U|36
1JGO|1|D|A|37
1JGO|1|D|U|38
1JGO|1|D|U|39
Current chains
- Chain D
- tRNA(Phe)
Nearby chains
- Chain 1
- MESSENGER RNA MK27
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- tRNA(Phe)
- Chain J
- 30S RIBOSOMAL PROTEIN S7
- Chain N
- 30S RIBOSOMAL PROTEIN S11
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